cBioPortal Community Call · June 23, 2026

AI Prototypes
& Future Concepts

cBioPortal Development Team
cBioPortal
Overview

What we'll demo today

🔌 Integration in Agentic Workflows MCP servers — Navigator + DB query tools for AI agents.
💬 Integration in the Website Prototype: AI assistant embedded in the main cBioPortal UI.
~15 min · live demos
cBioChat Stack
cBioChat Stack — MCP layer
cBioPortal Public DB MCP in Claude

https://mcp.cbioportal.org/db/mcp EXPERIMENTAL

cBioPortal Public Navigator MCP in Claude

https://mcp.cbioportal.org/navigator/mcp EXPERIMENTAL

Demo 1

Integration in Agentic Workflows

MCP Servers · Navigator · DB Queries

MCP demo — treatment data query MCP demo — imaging data query
live demo →
Context

LLMs in the browser

Several companies now ship browsers with built-in LLMs:

If the browser has an LLM, can it navigate cBioPortal for you?

Letting the browser's LLM navigate cBioPortal

cBioChat Stack — Website integration
Demo 2 · Zain Nasir

Integration in the Website

AI assistant embedded in cBioPortal

cBioPortal Assistant prototype live demo →

Discussion & Feedback

  1. MCP access — would your team use agent-based access to cBioPortal data?
  2. UI integration — what would you ask an AI assistant in cBioPortal?
  3. What's next? — what AI features would be most valuable for your workflow?
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